PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01383.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 218aa    MW: 24173.8 Da    PI: 4.705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01383.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-066890123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C+k Fs+k  L  H++ H
  Migut.J01383.1.p 68 YSCNYCPKKFSNKQALGGHQNAH 90
                      99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.91E-76495No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56594IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6556895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTRSLDMLKN FPSKNAEINE KAEEDSDGDP SLDLSLSLGK IDPNPVAVNS TEPPPLDGHV  60
VQHEEREYSC NYCPKKFSNK QALGGHQNAH KVEKVVAKSA MKGHESNYGY AGYQFCNGIP  120
FPSSFNQAPE RAINPFSMNA PYYPQYMQHQ MHAPAYPMFP IFHEPQLLHT NPDFTSYLPY  180
MGQGPSTSEG NLSADANNEQ DEEQPPEELG PDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01383.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A022QDD01e-145A0A022QDD0_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2289122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-12zinc finger protein 4