PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01511.1.p
Common NameLOC105958130, MIMGU_mgv1a014848mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LSD
Protein Properties Length: 177aa    MW: 18315.5 Da    PI: 8.4399
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01511.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.21.1e-12731125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr lL+YP GA++V+Ca+C +V
  Migut.J01511.1.p  7 CSGCRSLLMYPSGATNVCCAVCSAV 31
                      **********************998 PP
2zf-LSD147.82.4e-154670125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggCrtlL+Y+rGA sVRC++C+tV
  Migut.J01511.1.p 46 CGGCRTLLMYTRGAASVRCSCCHTV 70
                      ************************9 PP
3zf-LSD150.92.5e-1684108125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C+t+L+YP+GApsV+Ca+C+++
  Migut.J01511.1.p  84 CGNCQTTLMYPYGAPSVKCAICQFI 108
                       ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.7E-13434IPR005735Zinc finger, LSD1-type
PfamPF069438.0E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-174372IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.9E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1484108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQSQVVCSGC RSLLMYPSGA TNVCCAVCSA VTAIPPPGME MAQLICGGCR TLLMYTRGAA  60
SVRCSCCHTV NLAPAPNNIA HINCGNCQTT LMYPYGAPSV KCAICQFITN VNMGNARVPI  120
PMHRTIGPPS SASMPSSSAA MPNLQSQTVV VENPMSVDKS GKLVSNVVVG VTTDKK*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01511.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837586.11e-124PREDICTED: protein LSD1-like isoform X1
SwissprotQ6ASS22e-73LOL3_ORYSJ; Protein LOL3
TrEMBLA0A022RAM21e-123A0A022RAM2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-70LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]