PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01530.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 177aa    MW: 20135.2 Da    PI: 9.8779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.7e-101451148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv +++++G+g          + R+ k+c++rw +yl
  Migut.J01530.1.p 14 KGPWTPEEDIILVSYIQEHGPG----------LLRCSKSCRLRWTNYL 51
                      79******************99..........689***********97 PP
2Myb_DNA-binding46.96.1e-1557102148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+ E+  ++++ ++lG++ W++Ia +++  Rt++++k++w+++l
  Migut.J01530.1.p  57 RGNFTPHEEGMIIHLQALLGNK-WAAIATYLP-QRTDNDIKNYWNTHL 102
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-16554IPR009057Homeodomain-like
SuperFamilySSF466892.37E-251198IPR009057Homeodomain-like
SMARTSM007173.0E-61353IPR001005SANT/Myb domain
PfamPF002491.4E-81451IPR001005SANT/Myb domain
PROSITE profilePS5129423.31352106IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2555107IPR009057Homeodomain-like
SMARTSM007178.4E-1356104IPR001005SANT/Myb domain
PfamPF002492.6E-1357102IPR001005SANT/Myb domain
CDDcd001675.71E-959101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGLLRCS KSCRLRWTNY LRPGIKRGNF  60
TPHEEGMIIH LQALLGNKWA AIATYLPQRT DNDIKNYWNT HLKKKLKKLQ LPPFEAPPPP  120
QIAASSQDST FYRQFISKSY NGAERIIDNN HKVVVACILR GHVEAKNNSL LESYRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231210625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01530.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593892e-58KF059389.1 Salvia miltiorrhiza MYB-related transcription factor (MYB35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845836.11e-98PREDICTED: myb-related protein 306-like
SwissprotB3VTV76e-79MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A022QSR42e-94A0A022QSR4_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-72myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]