PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01541.1.p
Common NameLOC105965836, MIMGU_mgv1a012147mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 261aa    MW: 27800.4 Da    PI: 6.9175
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01541.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.8e-40441451101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++i +lqqq+++l+a
  Migut.J01541.1.p  44 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLTHIPANRRQDAVVTISYEAQARLSDPVYGCVSTIIALQQQVASLQA 136
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkeel 101
                       el++++++l
  Migut.J01541.1.p 137 ELSVVQTQL 145
                       ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.26343145IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3944142IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDMPQGDGGA SENRRRGPGR RSSSGHGGEA GADGGAAQAP ATAPCGACKF LRRKCVSGCI  60
FAPHFGSDQG AARFAAVHKV FGASNVSKLL THIPANRRQD AVVTISYEAQ ARLSDPVYGC  120
VSTIIALQQQ VASLQAELSV VQTQLINSRF VLANTLHHQN SPHLQNQHQT QHHIINSNND  180
NNIGAAYSNT SSASNCNNLI SNLHHNNNST FSTNFAETAP SNNSFDPVNL HLSGRALQDE  240
DEEEDESHDP AVAFANHIFR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-39411478113LOB family transfactor Ramosa2.1
5ly0_B3e-39411478113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01541.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845841.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-70LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A022QQW20.0A0A022QQW2_ERYGU; Uncharacterized protein
STRINGMigut.J01541.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-68LOB domain-containing protein 20