PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J01603.1.p

Common Name

MIMGU_mgv1a025797mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

WOX

Protein Properties

Length: 210aa MW: 23110.4 Da PI: 6.4181

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J01603.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3.1e-17	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+e+Le+lF+ + +p ++e ++ k l + +++V++WFqNrR + ++ Migut.J01603.1.p 22 RSRWTPKPEQIEILESLFNGgTVNPHRDETVRIRKMLqkfgPVGDANVFYWFQNRRSRSRR 82 89***************99************99999**************997 PP
2	Wus_type_Homeobox	104.5	6.9e-34	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+peQi+iLe+l++ G+++P ++e+ ri+++L+++G ++d+NVfyWFQNr++R+r++q Migut.J01603.1.p 21 ARSRWTPKPEQIEILESLFNGGTVNPHRDETVRIRKMLQKFGPVGDANVFYWFQNRRSRSRRRQ 84 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-10	18	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.677	18	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-14	18	89	IPR009057	Homeodomain-like
SMART	SM00389	3.9E-7	20	87	IPR001356	Homeobox domain
Pfam	PF00046	6.5E-15	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEDQEQDIGS GRSHGSEAEP ARSRWTPKPE QIEILESLFN GGTVNPHRDE TVRIRKMLQK 60 FGPVGDANVF YWFQNRRSRS RRRQRQLQAT LTAAAADQQP QAGGGGVGHH QYHENTISST 120 TTSGFSGSSS SFGLGGTDYL GPNDTSNLHY QSEGLITVFI NGVATEVTKG PLNVKAMFGG 180 DYLLFHCSGM PVDEVYDHGF LVQHGESYFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J01603.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839514.1	1e-156	PREDICTED: WUSCHEL-related homeobox 6-like
Swissprot	Q8GY25	8e-47	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A022R5X1	1e-155	A0A022R5X1_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	8e-31	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Migut.J01603.1.p

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]