PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00037.1.p
Common NameLOC105976737, MIMGU_mgv1a011179mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 291aa    MW: 30628.9 Da    PI: 9.9659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-083356225
                      -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                      k ++C  f+ tG C++G++C+F H
  Migut.K00037.1.p 33 KLKPCTKFFSTGGCPFGENCHFLH 56
                      6689******************** PP
2zf-CCCH26.41.2e-0899124227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+ C ++     Ck+Gd+C+FaHg+
  Migut.K00037.1.p  99 KTKVCVRYKTAEGCKFGDNCNFAHGE 124
                       899*********************96 PP
3zf-CCCH33.85.6e-11259282226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt+lC  f++ G C +Gd+C+FaHg
  Migut.K00037.1.p 259 KTKLCEKFSK-GSCTFGDKCHFAHG 282
                       9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5823159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0493158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-63358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-83356IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-63356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-1395128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-896128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.60197125IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-497124IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-599124IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.55E-15156235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.9E-15164233IPR004088K Homology domain, type 1
SMARTSM003222.9E-11164234IPR004087K Homology domain
PROSITE profilePS5008414.089165229IPR004088K Homology domain, type 1
CDDcd001051.06E-13167229No hitNo description
PfamPF000134.4E-11167231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.9E-15254288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403257284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8257287IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5257283IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8259282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDIRKRGGGE FPNGSFKKFK PEMDSLSSGI GSKLKPCTKF FSTGGCPFGE NCHFLHFVPG  60
GYKTVAQMMN LSPAPPSRPV HGPPPPVQSH NGSAPSAVKT KVCVRYKTAE GCKFGDNCNF  120
AHGEWELGKP IPPSQENPRS VGPATNQTRY APRVDPPPAV SFGASATAKI SVDASLAGAV  180
IGKGGVNSKQ ICRQAGVKLA VRDHETDPNL RNIELEGSFE QIQQASAMVR ELIVNIGSAA  240
RAHAKGSGAM SGSTGNFLKT KLCEKFSKGS CTFGDKCHFA HGAAELRKTG *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00037.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857451.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ33e-99C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A022Q2F00.0A0A022Q2F0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-62C3H family protein