PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00037.2.p
Common NameLOC105976737, MIMGU_mgv1a011179mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 224aa    MW: 23356.5 Da    PI: 9.8494
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00037.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.3e-093257227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+ C ++     Ck+Gd+C+FaHg+
  Migut.K00037.2.p 32 KTKVCVRYKTAEGCKFGDNCNFAHGE 57
                      899*********************96 PP
2zf-CCCH34.34e-11192215226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt+lC  f++ G C +Gd+C+FaHg
  Migut.K00037.2.p 192 KTKLCEKFSK-GSCTFGDKCHFAHG 215
                       9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.6E-132861IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-82961IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6013058IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-1589168IPR004088K Homology domain, type 1
SMARTSM003222.9E-1197167IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.8E-1597166IPR004088K Homology domain, type 1
PROSITE profilePS5008414.08998162IPR004088K Homology domain, type 1
PfamPF000132.7E-11100164IPR004088K Homology domain, type 1
CDDcd001054.71E-14100162No hitNo description
Gene3DG3DSA:4.10.1000.102.0E-15187221IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5190216IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8190220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403190217IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8192215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMNLSPAPPS RPVHGPPPPV QSHNGSAPSA VKTKVCVRYK TAEGCKFGDN CNFAHGEWEL  60
GKPIPPSQEN PRSVGPATNQ TRYAPRVDPP PAVSFGASAT AKISVDASLA GAVIGKGGVN  120
SKQICRQAGV KLAVRDHETD PNLRNIELEG SFEQIQQASA MVRELIVNIG SAARAHAKGS  180
GAMSGSTGNF LKTKLCEKFS KGSCTFGDKC HFAHGAAELR KTG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00037.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857451.11e-163PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ34e-76C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A022Q2F01e-161A0A022Q2F0_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-64C3H family protein