PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00116.1.p
Common NameLOC105976661, MIMGU_mgv1a009040mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 356aa    MW: 40055.9 Da    PI: 8.1622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09101126127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt++C+ f + G C  Gd+C+FaHgp
  Migut.K00116.1.p 101 FKTRICSKFNE-GKCENGDQCSFAHGP 126
                       69*********.*************96 PP
2zf-CCCH25.62.1e-08169191325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       +++C+ f+ + +C+yGd+C+F H
  Migut.K00116.1.p 169 MKICKKFYNGEECPYGDKCNFLH 191
                       579******66************ PP
3zf-CCCH352.4e-11240265127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+ C+ +   G+C++GdrC++aHg+
  Migut.K00116.1.p 240 WKTRMCSKWEM-GQCPFGDRCHYAHGQ 265
                       8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.1E-1597133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-898131IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535100127IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7165193IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089166194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-8168192IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6169191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-16236269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-9238269IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6239265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497239266IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7240265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSYPDPTPPT YPFIPPPFAA GDGGAPAAGF WPGFWTGNND QQHQQQQQQQ PDLMSQFDRP  60
PYKRPRIAEK PSNFPPPVQQ TNPRMNPPNI PVNKGTSHIF FKTRICSKFN EGKCENGDQC  120
SFAHGPEDLR QPPPNWQELI REKDRASMNN ASSFGGNGGD DRRTMIHRMK ICKKFYNGEE  180
CPYGDKCNFL HERPLSPPVR KFRPDDMPEQ RESSVINVGI TWDASRGNVG ADVDHNKVFW  240
KTRMCSKWEM GQCPFGDRCH YAHGQSELKS HVSVSDSVHF EPAKEAVSIP RKPVPVSAFT  300
AAPANNLVAA IPSSNGDEES KKLSKWKLTK KINRIYADWL DDMTPPHNSP TQEDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00116.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857369.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A022Q0W10.0A0A022Q0W1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-61C3H family protein