PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00338.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family RAV
Protein Properties Length: 358aa    MW: 39136.2 Da    PI: 9.0882
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00338.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63e-084390154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      s++kGV    ++g W A+I+       + +r +lg+f ++ eAa a++ a   l+
  Migut.K00338.1.p 43 SKFKGVV-SQSNGNWGAQIYA------NhQRNWLGTFKSEVEAAMAYDSASITLR 90
                      79****7.5569******999......44**********99*******9977665 PP
2B379.92.6e-25174272185
                       EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                       f+k+ltpsdv+k++rlv+pkk+a ++               gg+   + +lt+ d+    W+++++y+k+s+++v+t+GW++F+k++gLk+ D
  Migut.K00338.1.p 174 FQKELTPSDVSKLNRLVIPKKYAVKYfprimdkvegqngkdGGI--MDLELTFVDRGMSPWKFRYCYWKSSQSFVFTRGWNRFAKDKGLKSMD 264
                       99****************************99887776655444..5669******************************************* PP

                       EEEEE.E- CS
                B3  79 fvvFk.ld 85 
                        v+F+ ++
  Migut.K00338.1.p 265 KVIFYsYE 272
                       ****9332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-114393IPR016177DNA-binding domain
CDDcd000182.62E-1643107No hitNo description
Gene3DG3DSA:3.30.730.108.6E-134492IPR001471AP2/ERF domain
SMARTSM003802.8E-1244111IPR001471AP2/ERF domain
PROSITE profilePS5103214.81644105IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.3E-32171282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-26173280IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-24173269No hitNo description
PROSITE profilePS5086311.491174287IPR003340B3 DNA binding domain
SMARTSM010195.8E-19174284IPR003340B3 DNA binding domain
PfamPF023621.3E-22174271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEKSILSGS EISDSNSSST TTTALPFFPG HDIINSGPAA PPSKFKGVVS QSNGNWGAQI  60
YANHQRNWLG TFKSEVEAAM AYDSASITLR PSGGCVGGAT HRNFPWTSIT ACEPHFQRQF  120
TTEAVLNMIK DGTYAARFSE YLRSHGRQVA AGRGRRCLSA SAHGAVGVRM RQLFQKELTP  180
SDVSKLNRLV IPKKYAVKYF PRIMDKVEGQ NGKDGGIMDL ELTFVDRGMS PWKFRYCYWK  240
SSQSFVFTRG WNRFAKDKGL KSMDKVIFYS YECGGKKMCL IDVAYNSDGV GAVVEGGVGP  300
RELAEVAEAG LDGVERMDFE GSVVNAVEDV TQNVDASSAN NYSPRGKGFK LFGVQII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2217326813100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00338.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844128.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_012844129.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P52e-87RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A022QWQ90.0A0A022QWQ9_ERYGU; Uncharacterized protein
STRINGMigut.K00338.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-87RAV family protein