PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00376.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 365aa    MW: 40859.1 Da    PI: 6.6646
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00376.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69.1e-083033352254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +yp++e++++L +++gL+ +q+ +WF N+R +
  Migut.K00376.1.p 303 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 335
                       69*****************************87 PP
2ELK29.12.3e-10256277122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Migut.K00376.1.p 256 ELKHELKQGYKEKIVDIREEIL 277
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-20104148IPR005540KNOX1
PfamPF037905.0E-18106147IPR005540KNOX1
SMARTSM012561.8E-13150199IPR005541KNOX2
PfamPF037916.4E-11160198IPR005541KNOX2
PROSITE profilePS512139.969256276IPR005539ELK domain
SMARTSM011886.1E-4256277IPR005539ELK domain
PfamPF037898.2E-7256277IPR005539ELK domain
PROSITE profilePS5007111.758276339IPR001356Homeobox domain
SuperFamilySSF466893.76E-16278343IPR009057Homeodomain-like
SMARTSM003895.2E-11278343IPR001356Homeobox domain
CDDcd000861.16E-11279340No hitNo description
Gene3DG3DSA:1.10.10.605.5E-25283340IPR009057Homeodomain-like
PfamPF059209.7E-18296335IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPLHHPHYSD NHASVFRSLL PDHHLSPDDK PSQAPPPTTT TTAWLNHHHH HQWLPTQSQL  60
SPTTPPDNNN NNNNDHLHHD SGAAGDKSNS SGGGGGSSTN WEREKYKADI LSHPLYEQLL  120
SAHVSCLRIA TPVDQLPRID AQLAQSQQVV AKSPFSDTTH YVLLLSSFKE QLQQHVRVHA  180
MEAVMACWEL EQSLQSLTGV APGEGTGATM SDDDEDQADS ETNLFDESLD GGDNMGFGPL  240
VPTETERSLM ERVRLELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SVLKSWWQSH  300
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSSSTPKSKR KSGAGDKTGN  360
ERFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13279343872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00376.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084049.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-158KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2G9HS050.0A0A2G9HS05_9LAMI; Transcription factor MEIS1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-147KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]