PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K00443.1.p

Common Name

LOC105960644, MIMGU_mgv1a014582mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

YABBY

Protein Properties

Length: 186aa MW: 21055 Da PI: 9.321

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00443.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	208.3	2.8e-64	2	157	7	170
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +eq+Cy+ CnfC+ +lavsvP +slf vvtvrCGhCt+l svn+a + + +hl + + + +++ + +v s+s+ ++++ Migut.K00443.1.p 2 AEQLCYIPCNFCSIVLAVSVPCNSLFDVVTVRCGHCTNLWSVNMASTFHPFWPDHHLLH--------QAPNYNSSSEYKVDLGGSSSKLNNKM 86 69*************************************999988887776666433........33333333333344444444444555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ + ++p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Migut.K00443.1.p 87 SIQPSIPTKLPEQRTVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 157 566777888999999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.7E-70	2	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.03E-7	101	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	104	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MAEQLCYIPC NFCSIVLAVS VPCNSLFDVV TVRCGHCTNL WSVNMASTFH PFWPDHHLLH 60 QAPNYNSSSE YKVDLGGSSS KLNNKMSIQP SIPTKLPEQR TVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLE TTNQTAKLNE GSEKHKMRRA 180 AIVNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00443.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY451397	2e-40	AY451397.1 Antirrhinum majus YABBY-like transcription factor PROLONGATA (PROL) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840285.1	1e-138	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	2e-75	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A022R5T5	1e-137	A0A022R5T5_ERYGU; Uncharacterized protein
STRING	Migut.K00443.1.p	1e-138	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-77	YABBY family protein

Link Out ? help Back to Top
Phytozome	Migut.K00443.1.p
Entrez Gene	105960644

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]