PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00566.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 250aa    MW: 27828 Da    PI: 7.462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00566.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+++Ed  l+++v+ +G+g +W + +++ g++R++k+c++rw++yl
  Migut.K00566.1.p 14 RGPWSPQEDNTLKNYVENHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding44.63.3e-1469111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T+eEd +++ + +  G++ W+ Ia+ ++ gRt++++k++w++
  Migut.K00566.1.p  69 GGFTEEEDHIILTLYHNIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.33962IPR017930Myb domain
SuperFamilySSF466893.32E-2712109IPR009057Homeodomain-like
SMARTSM007175.5E-111364IPR001005SANT/Myb domain
PfamPF002493.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-241569IPR009057Homeodomain-like
CDDcd001676.04E-81662No hitNo description
PROSITE profilePS5129421.28263117IPR017930Myb domain
SMARTSM007179.5E-1267115IPR001005SANT/Myb domain
PfamPF002493.3E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2470117IPR009057Homeodomain-like
CDDcd001671.89E-871110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPQ EDNTLKNYVE NHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDHIIL TLYHNIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLLLA  120
AAATSTTTSA ATTATTSSSN NSFTSVTTNN YNNLWQPSSS SIYSTNDIIN YELINNMLPY  180
FPSNDQELMN PLPGLTEIPE NETEVENNAY NCGLFHPCAA PPFSGQLTTS FSLDNNIIIN  240
NNNNININGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00566.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845415.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A022QTN01e-149A0A022QTN0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-66myb domain protein 36