PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00654.2.p
Common NameMIMGU_mgv1a023272mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 229aa    MW: 26126.3 Da    PI: 6.316
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00654.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-081782112154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L +++gL+ +q+ +WF N+R +
  Migut.K00654.2.p 178 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 211
                       469*****************************87 PP
2ELK29.91.3e-10132153122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Migut.K00654.2.p 132 ELKHELKQGYKEKIVDIREEIL 153
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.8E-242075IPR005541KNOX2
PfamPF037915.5E-192474IPR005541KNOX2
SMARTSM011886.1E-4132153IPR005539ELK domain
PROSITE profilePS512139.969132152IPR005539ELK domain
PfamPF037894.5E-7132153IPR005539ELK domain
PROSITE profilePS5007111.758152215IPR001356Homeobox domain
SMARTSM003895.2E-11154219IPR001356Homeobox domain
SuperFamilySSF466891.37E-16154219IPR009057Homeodomain-like
CDDcd000861.41E-11155216No hitNo description
Gene3DG3DSA:1.10.10.602.5E-25159216IPR009057Homeodomain-like
PfamPF059204.9E-18172211IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
IDAQLAQSQQ VVAKYSVLGQ GQHPLDDKDL DHFMTHYVLL LSSFKEQLQQ HVRVHAMEAV  60
MACWELEQSL QSLTGVAPGE GTGATMSDDD EDQADSETNL FDESLDGGDN MGFGPLVPTE  120
TERSLMERVR LELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK SWWQSHSKWP  180
YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS TPKSKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-13155219872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208227RKRNWHSNPSSSTPKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00654.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845383.11e-169PREDICTED: homeobox protein knotted-1-like LET12, partial
SwissprotO223001e-138LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A022QSN11e-163A0A022QSN1_ERYGU; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-134KNOTTED1-like homeobox gene 4