PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00664.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 208aa    MW: 23600.4 Da    PI: 6.5243
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00664.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-081451782154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L +++gL+ +q+ +WF N+R +
  Migut.K00664.1.p 145 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 178
                       469*****************************87 PP
2ELK30.11.1e-1099120122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++++++++E++
  Migut.K00664.1.p  99 ELKHELKQGYKEKIVDIREEIL 120
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.8E-12142IPR005541KNOX2
PfamPF037912.9E-12141IPR005541KNOX2
PROSITE profilePS512139.96999119IPR005539ELK domain
PfamPF037893.9E-799120IPR005539ELK domain
SMARTSM011886.1E-499120IPR005539ELK domain
PROSITE profilePS5007111.758119182IPR001356Homeobox domain
SMARTSM003895.2E-11121186IPR001356Homeobox domain
SuperFamilySSF466891.33E-16121186IPR009057Homeodomain-like
CDDcd000869.86E-12122183No hitNo description
Gene3DG3DSA:1.10.10.602.1E-25126183IPR009057Homeodomain-like
PfamPF059204.2E-18139178IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSHYVLLLSS FKEQLQQHVR VHAMEAVMAC WELEQSLQSL TGVAPGEGTG ATMSDDDEDQ  60
ADSETNLFDE SLDGGDNMGF GPLVPTETER SLMERVRLEL KHELKQGYKE KIVDIREEIL  120
RKRRAGKLPG DTTSVLKSWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  180
HSNPSSSTPK SKRKSGAGDK TGNERFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-14122186872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00664.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845383.11e-153PREDICTED: homeobox protein knotted-1-like LET12, partial
SwissprotP480001e-127KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A022QSN11e-142A0A022QSN1_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-119KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]