PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K00827.1.p

Common Name

MIMGU_mgv1a012920mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 237aa MW: 27009.8 Da PI: 7.0693

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00827.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.6	3.8e-37	13	110	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk lrrkC++dC++apyfp ++p+kf nvhk+FGasnv+k+l++l++ red+++slv+eAe+r++d vyG+v++i lq+ +++l +e Migut.K00827.1.p 13 PCAACKCLRRKCVNDCIFAPYFPPNDPQKFTNVHKVFGASNVSKILHELHPRLREDTVKSLVFEAECRLQDQVYGCVKHIYFLQETMKKLLNE 105 7******************************************************************************************99 PP DUF260 94 lallk 98 ++++k Migut.K00827.1.p 106 IQSRK 110 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.471	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-37	13	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MLRRREALAS NTPCAACKCL RRKCVNDCIF APYFPPNDPQ KFTNVHKVFG ASNVSKILHE 60 LHPRLREDTV KSLVFEAECR LQDQVYGCVK HIYFLQETMK KLLNEIQSRK MDLTRYMGPQ 120 AMLVGTPHDP HRIEMQQIVA HEQQQQQQQQ LMLHHQLQQQ LLLNDAVSFN DVFDGPGNEN 180 SVTASGFNQM PAAAVDVVQP HTVGLDCSYG DHLQTQTPLQ QEQRQTFCDS DKQPII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-41	9	116	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-41	9	116	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00827.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835020.1	1e-177	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	A0A022RHD4	1e-176	A0A022RHD4_ERYGU; Uncharacterized protein
STRING	Migut.K00827.1.p	1e-176	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-47	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Migut.K00827.1.p