PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00957.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 20779.6 Da    PI: 5.566
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00957.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.7e-24959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++  r v fskRrng++KKA+ELSvLCd++ a iifs++gkl+eyss
  Migut.K00957.1.p  9 KRIEENGARMVCFSKRRNGLIKKAKELSVLCDVDLATIIFSNRGKLFEYSS 59
                      79***********************************************96 PP
2K-box31.38.6e-121031574296
             K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       +L++Ls+ +L+ L++++e ++++ Rs K++ +++ ++ l++ ek+l ee+++L++
  Migut.K00957.1.p 103 ELDELSVTDLMLLQKEIEAAISQTRSAKTKKMISTVSSLREEEKSLAEEKRSLEE 157
                       79*************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.978161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-31160IPR002100Transcription factor, MADS-box
CDDcd002653.67E-31277No hitNo description
SuperFamilySSF554556.67E-27276IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.21367165IPR002487Transcription factor, K-box
PfamPF014861.2E-7103157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRKKLEIKR IEENGARMVC FSKRRNGLIK KAKELSVLCD VDLATIIFSN RGKLFEYSST  60
DSIEPVLQRY KDEAESSTRS SEAKGQSNNS ITSDELLLDV ERELDELSVT DLMLLQKEIE  120
AAISQTRSAK TKKMISTVSS LREEEKSLAE EKRSLEEITG KNRNARGKKM IVDLNVAADD  180
QMTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19177176MEF2 CHIMERA
6byy_B2e-19177176MEF2 CHIMERA
6byy_C2e-19177176MEF2 CHIMERA
6byy_D2e-19177176MEF2 CHIMERA
6bz1_A2e-19177176MEF2 CHIMERA
6bz1_B2e-19177176MEF2 CHIMERA
6bz1_C2e-19177176MEF2 CHIMERA
6bz1_D2e-19177176MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00957.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722430.0KP172243.1 Erythranthe guttata MADS affecting flowering 601 (MAF601) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842144.11e-128PREDICTED: agamous-like MADS-box protein AGL27
RefseqXP_012842145.11e-128PREDICTED: agamous-like MADS-box protein AGL27
RefseqXP_012842146.11e-128PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022R3T51e-119A0A022R3T5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.43e-29MIKC_MADS family protein