PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00960.1.p
Common NameMIMGU_mgv1a014602mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 20831.7 Da    PI: 6.7392
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00960.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF762.9e-24959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++  r v fskRrng++KKA+ELSvLCd++va iifs++gkl+ ++s
  Migut.K00960.1.p  9 KRIEDNGARMVCFSKRRNGLIKKAKELSVLCDVDVAAIIFSKRGKLFQFCS 59
                      79***********************************************96 PP
2K-box32.73.2e-121021574196
             K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        +L++Ls+ +L+ L++++e ++++ Rs K++ +++ ++ l++ ek+l ee+++L++
  Migut.K00960.1.p 102 RELDELSVTDLMLLQKEIEAAISQTRSAKTQRMVDTVSSLREEEKSLAEEKRSLEE 157
                       689*************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.132161IPR002100Transcription factor, MADS-box
CDDcd002652.24E-32277No hitNo description
SuperFamilySSF554556.54E-28277IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-24323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.64767165IPR002487Transcription factor, K-box
PfamPF014863.0E-8103157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRKKLEIKR IEDNGARMVC FSKRRNGLIK KAKELSVLCD VDVAAIIFSK RGKLFQFCST  60
DSIDPVLQRY KDEAESSTRS SEAKSQSNNS ITSDELLRDV ERELDELSVT DLMLLQKEIE  120
AAISQTRSAK TQRMVDTVSS LREEEKSLAE EKRSLEEITG KNRNARGKKI ILDLNVAADD  180
QMTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-20177176MEF2 CHIMERA
6byy_B1e-20177176MEF2 CHIMERA
6byy_C1e-20177176MEF2 CHIMERA
6byy_D1e-20177176MEF2 CHIMERA
6bz1_A1e-20177176MEF2 CHIMERA
6bz1_B1e-20177176MEF2 CHIMERA
6bz1_C1e-20177176MEF2 CHIMERA
6bz1_D1e-20177176MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00960.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722430.0KP172243.1 Erythranthe guttata MADS affecting flowering 601 (MAF601) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842147.11e-128PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022R3T51e-122A0A022R3T5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.47e-31MIKC_MADS family protein