PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00963.1.p
Common NameLOC105962397, MIMGU_mgv1a014491mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21261.4 Da    PI: 6.0842
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00963.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.7e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++s r v fskRrng++KKA+ELS LCd++va +ifs++gklyey+s
  Migut.K00963.1.p  9 KRIEENSARMVCFSKRRNGLIKKAKELSALCDVDVAAVIFSNRGKLYEYCS 59
                      79***********************************************96 PP
2K-box39.32.8e-141121674398
             K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +++Ls+ eL  +++qLe+++ +iRs+K++++++  + lq+kek+l+ee+k L++ +
  Migut.K00963.1.p 112 VDQLSVAELGLMQKQLETAIMEIRSTKTKFMTDAQSSLQEKEKMLEEEKKHLNEIV 167
                       579************************************************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.796161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-28277IPR002100Transcription factor, MADS-box
CDDcd002651.00E-32271No hitNo description
PRINTSPR004044.9E-24323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.9983173IPR002487Transcription factor, K-box
PfamPF014861.2E-9112166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRKKLEMKR IEENSARMVC FSKRRNGLIK KAKELSALCD VDVAAVIFSN RGKLYEYCSA  60
DSMAQVLQEY QSRVESDKDG CDTEGLYSKN GDYLTYGELL KTVGSELKEP RVDQLSVAEL  120
GLMQKQLETA IMEIRSTKTK FMTDAQSSLQ EKEKMLEEEK KHLNEIVEDN NCAKKKKVVV  180
DLNIATE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-17186185MEF2 CHIMERA
6byy_B9e-17186185MEF2 CHIMERA
6byy_C9e-17186185MEF2 CHIMERA
6byy_D9e-17186185MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00963.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722420.0KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842155.11e-134PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022R0M91e-133A0A022R0M9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.11e-36MIKC_MADS family protein