PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00965.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21387.5 Da    PI: 8.1988
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00965.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.3e-24959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien+s + v fskRrng++KKA ELSvLC+++va i fs++gklyey+s
  Migut.K00965.1.p  9 KQIENNSAQMVCFSKRRNGLIKKARELSVLCNVDVAAIFFSKRGKLYEYCS 59
                      78***********************************************96 PP
2K-box33.32.1e-121121644395
             K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       ++++s+ +L  L++++e++l  +Rs+K++++++  + lq+ke++l+ee+k  +
  Migut.K00965.1.p 112 VDKISVADLGLLQKHVETALMDVRSTKTKIMTDAQSSLQEKENMLEEEKKHFN 164
                       56899*******************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.703161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-27277IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-22323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.21176173IPR002487Transcription factor, K-box
PfamPF014865.2E-8112165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRRKLEMKQ IENNSAQMVC FSKRRNGLIK KARELSVLCN VDVAAIFFSK RGKLYEYCSA  60
NSMAHVLQQY QSRVESEKDG CDTEDLYSRN GDYLTYSELL KTVGSELKEP HVDKISVADL  120
GLLQKHVETA LMDVRSTKTK IMTDAQSSLQ EKENMLEEEK KHFNEIVEGN KCAKKKKVVI  180
DLNITADG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00965.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722421e-169KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842152.11e-137PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A022R3T81e-108A0A022R3T8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.12e-39MIKC_MADS family protein