PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00994.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21392.6 Da    PI: 8.1924
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00994.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.1e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien+s r v fskRr g++KKA+ELSvLCd++va iifs++gkly y+s
  Migut.K00994.1.p  9 KQIENNSARMVCFSKRRSGLIKKAKELSVLCDVDVAAIIFSKRGKLYQYCS 59
                      78***********************************************96 PP
2K-box34.49.4e-131121644395
             K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       ++++s+ +L  ++++Le++l  iRs+K++l+++  + lq+kek+l+ee+k  +
  Migut.K00994.1.p 112 VDKISVADLGLMQKHLETALMDIRSTKTKLMTDAQSSLQEKEKMLEEEKKHFN 164
                       56899*******************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.048161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-28277IPR002100Transcription factor, MADS-box
CDDcd002654.80E-33271No hitNo description
PRINTSPR004044.4E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.45376173IPR002487Transcription factor, K-box
PfamPF014863.0E-8112165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRRKLEMKQ IENNSARMVC FSKRRSGLIK KAKELSVLCD VDVAAIIFSK RGKLYQYCSA  60
NSMAQVLQEY QSRVESEKDG CDTEDLYSRN GDYLTYSELL KTVGSELKEP HVDKISVADL  120
GLMQKHLETA LMDIRSTKTK LMTDAQSSLQ EKEKMLEEEK KHFNEIVEGN NSAKKKKVVI  180
DLNIAVDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16186185MEF2 CHIMERA
6byy_B3e-16186185MEF2 CHIMERA
6byy_C3e-16186185MEF2 CHIMERA
6byy_D3e-16186185MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00994.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722420.0KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837438.11e-136PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022R3T81e-112A0A022R3T8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.11e-37MIKC_MADS family protein