PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K00996.1.p
Common NameLOC105957992, MIMGU_mgv1a014510mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21226.4 Da    PI: 7.096
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K00996.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.54e-24959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++s r v fskRrng++KKA+ELS LCd++va +ifs++gkly y+s
  Migut.K00996.1.p  9 KRIEENSARMVCFSKRRNGLIKKAKELSALCDVDVAAVIFSNRGKLYQYCS 59
                      79***********************************************96 PP
2K-box371.4e-131121674398
             K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +e+Ls+ +L  +++qLe++l +iRs+K++++++  + lq+kek l+ee+k L++ +
  Migut.K00996.1.p 112 VEQLSVADLGLMQKQLETALMEIRSTKTKMMTDAQSSLQEKEKILEEEKKHLNEIV 167
                       689************************************************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.516161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-28277IPR002100Transcription factor, MADS-box
CDDcd002651.75E-32271No hitNo description
PRINTSPR004041.1E-23323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.183173IPR002487Transcription factor, K-box
PfamPF014862.9E-9112166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRKKLEMKR IEENSARMVC FSKRRNGLIK KAKELSALCD VDVAAVIFSN RGKLYQYCSA  60
DSMAQVLQEY QSRVESDKDG CDTEGLYSKN GDYLTYGELL KTVGSELKEP RVEQLSVADL  120
GLMQKQLETA LMEIRSTKTK MMTDAQSSLQ EKEKILEEEK KHLNEIVEDN NCAKKKKVVV  180
DLNIATE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17186185MEF2 CHIMERA
6byy_B2e-17186185MEF2 CHIMERA
6byy_C2e-17186185MEF2 CHIMERA
6byy_D2e-17186185MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K00996.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722420.0KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837439.11e-134PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022RAW71e-132A0A022RAW7_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.23e-36AGAMOUS-like 31