PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K01001.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 132aa    MW: 14619.8 Da    PI: 8.6223
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K01001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.4e-212421151
                      HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      v fskRr g++KKA+ELSvLCd++va i fs++gkly y+s
  Migut.K01001.1.p  2 VCFSKRRSGLIKKAKELSVLCDVDVATIFFSKSGKLYQYCS 42
                      89*************************************96 PP
2K-box17.31.9e-07851282770
             K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                       ++  L++  R l   ++++Ls+ +L  L++q e +l +i s+K+
  Migut.K01001.1.p  85 RNGLLRNFARDLNEACIDELSVTDLILLQKQTEAALIQISSTKM 128
                       677888889999999**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.1144IPR002100Transcription factor, MADS-box
PfamPF003191.6E-20140IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-12243IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-20254IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-15621IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-152142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MVCFSKRRSG LIKKAKELSV LCDVDVATIF FSKSGKLYQY CSTDRIAPIL ERYRIAREQL  60
GASSTGYSEA PMGQSSEHPG FIITRNGLLR NFARDLNEAC IDELSVTDLI LLQKQTEAAL  120
IQISSTKMYS T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K01001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722424e-37KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837450.19e-89PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A022R3T56e-38A0A022R3T5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-19MIKC_MADS family protein