PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K01166.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 236aa MW: 26263.3 Da PI: 5.1804

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K01166.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	85	8.6e-27	75	144	24	93
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 a i+ dake +qec+sefi +t+ea+ +c+re rkt+ ++d+l a+a+lG+edy+epl+++l+k+r Migut.K01166.1.p 75 LAEITYDAKEAIQECISEFIRVITAEANVRCHREYRKTVMPEDVLAAMASLGLEDYLEPLTTFLNKHRAQ 144 5889***************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.8E-28	76	157	IPR009072	Histone-fold
Pfam	PF00808	1.3E-12	76	122	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.91E-23	78	164	IPR009072	Histone-fold
PRINTS	PR00615	1.2E-11	86	104	No hit	No description
PRINTS	PR00615	1.2E-11	105	123	No hit	No description
PRINTS	PR00615	1.2E-11	124	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MERGRSSDIE YKYTRRARTS GIVIREQGAP VVATAAATNA AYIPAPPNAA VGEMNREQQR 60 GFKREPISPA SYDALAEITY DAKEAIQECI SEFIRVITAE ANVRCHREYR KTVMPEDVLA 120 AMASLGLEDY LEPLTTFLNK HRAQQDPERN SMNQVQQFVR RGNTGGGDNS NGFVYPQQQQ 180 GDQIVQSPPP TATASTLGYY VHLPPPPFAT VEDEEERGEL TKVKDDYMLR NLNHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-22	74	142	28	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K01166.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012841020.1	5e-67	PREDICTED: nuclear transcription factor Y subunit beta-like
TrEMBL	A0A022QAG3	1e-126	A0A022QAG3_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.K01166.1.p	1e-175	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6044	4	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-24	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Migut.K01166.1.p