PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K01260.1.p

Common Name

LOC105973556, MIMGU_mgv1a011333mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Dof

Protein Properties

Length: 286aa MW: 30291.2 Da PI: 6.8609

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K01260.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	2e-38	37	96	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Migut.K01260.1.p 37 NQVLKCPRCESINTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 96 6889****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	35	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MQDIHAFGGG AATGGGGGES FFGGGDRRLR PHSHPNNQVL KCPRCESINT KFCYYNNYNL 60 SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR KAKRSKQKSS AAAYPVDAPG DRSPNAQSSS 120 SESSSLTAAA AATPTSTAKA AAEEGSPPNN KTTKPTPPDN YPDSMFFNGN PNFDHQSAPE 180 GQIFAADVGS FTSLMESSST EMLGFGMADV TTTPYERVHQ ENQTPAPNNS GLEMTATGVG 240 MNNDGLAAAL DWGGGDQGMF NLTAAVDPAY WSQSHWNDQS LNYLL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K01260.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009769	4e-48	AP009769.1 Lotus japonicus genomic DNA, clone: LjT13A22, TM1930, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854046.1	0.0	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A022Q6Q4	0.0	A0A022Q6Q4_ERYGU; Uncharacterized protein
STRING	Migut.K01260.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-33	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Migut.K01260.1.p
Entrez Gene	105973556