PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K01270.1.p

Common Name

LOC105960853, MIMGU_mgv1a012180mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

TCP

Protein Properties

Length: 260aa MW: 29476.4 Da PI: 6.1336

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K01270.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.4	6.5e-31	42	172	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl++ak+ i+ l+ + Migut.K01270.1.p 42 FGGKDRHSKVCTVKGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLEAAKADIDLLPPLqqipimqniqnydpvmkfndvvvsssger 134 689*************************************************************77777766665555544444444322221 PP TCP 66 ssssaseceaesssssasnsssg......................kaaksaakskksqksa 104 + e+ g +++ +s+ q+++ Migut.K01270.1.p 135 N-----ET--------------GsnwsrnddeeeeitrqynnflsRSS----SSSVVQNNP 172 0.....22..............12222222222223333333332111....122222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.075	44	102	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-28	44	171	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MIPMDLDFTA KQETDKPSSS STTTTSWSRL KDPRIVRVSR AFGGKDRHSK VCTVKGLRDR 60 RVRLSVPTAI QLYDLQERLG LNQPSKVVDW LLEAAKADID LLPPLQQIPI MQNIQNYDPV 120 MKFNDVVVSS SGERNETGSN WSRNDDEEEE ITRQYNNFLS RSSSSSVVQN NPASFSSLMN 180 NHINNNNNNN SFLRWEYPSN LTLSQPPVSL GLASSSSQYN GDQDLQNFGH FFQFQPYYFP 240 PPQNNNSASE HDRQNEPRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-17	49	103	1	55	Putative transcription factor PCF6
5zkt_B	2e-17	49	103	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K01270.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840515.1	0.0	PREDICTED: transcription factor TCP24-like
TrEMBL	A0A022R306	0.0	A0A022R306_ERYGU; Uncharacterized protein
STRING	Migut.K01270.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	4e-43	TCP domain protein 17

Link Out ? help Back to Top
Phytozome	Migut.K01270.1.p
Entrez Gene	105960853