PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.K01341.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 255aa    MW: 28661.2 Da    PI: 6.5033
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.K01341.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.21.1e-37101111101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       aCaaCk++rrkC+++C+lapyfpa+qpk+f++vh+lFG+snv+k+l++l+++  ++dam+s+++e+++r + Pv+G+++vi++l+ q++ + +
  Migut.K01341.1.p  10 ACAACKYQRRKCSPKCPLAPYFPANQPKTFQCVHRLFGVSNVTKTLRSLKTDIeKDDAMKSIIFESKMREQFPVEGCTRVIQDLRLQIHYALQ 102
                       7************************************************66644*************************************** PP

            DUF260  93 elallkeel 101
                       el++++++l
  Migut.K01341.1.p 103 ELNRVHAQL 111
                       ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5379111IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-3510108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMVKGSTTPA CAACKYQRRK CSPKCPLAPY FPANQPKTFQ CVHRLFGVSN VTKTLRSLKT  60
DIEKDDAMKS IIFESKMREQ FPVEGCTRVI QDLRLQIHYA LQELNRVHAQ LAACRNHHLW  120
MNAQPSAAAE DDYSSTWVPA GGPPTYFESG WVDPRVSDSH PSWLPGSTRF DPGASSSNAP  180
PPTTTMPANN YHYLMNENSG GFYSDSDLSG IKEIQEQMES FGIQQFPRLD QDSDELVMKS  240
MEEKLSQIDR DHTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2451117111LOB family transfactor Ramosa2.1
5ly0_B1e-2451117111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.K01341.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840473.10.0PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A022R4Z61e-169A0A022R4Z6_ERYGU; Uncharacterized protein
STRINGMigut.K01341.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-38LOB domain-containing protein 27