PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00038.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 1233aa    MW: 136054 Da    PI: 4.9181
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.2e-0612081231226
                        -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                        ++++C+ f+++G Ck G+ C + H+
  Migut.L00038.1.p 1208 GQRICK-FYESGRCKKGAFCDYLHP 1231
                        6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-9107164IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.6E-9112171IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.52117183IPR019787Zinc finger, PHD-finger
CDDcd155681.20E-18119164No hitNo description
SMARTSM002496.7E-7119165IPR001965Zinc finger, PHD-type
PROSITE patternPS013590120180IPR019786Zinc finger, PHD-type, conserved site
SMARTSM007195.4E-44431541IPR004343Plus-3 domain
PROSITE profilePS5136025.866431564IPR004343Plus-3 domain
SuperFamilySSF1590426.28E-31432560IPR004343Plus-3 domain
PfamPF031261.3E-22436538IPR004343Plus-3 domain
SuperFamilySSF552778.76E-9710771IPR003169GYF domain
PROSITE profilePS508299.919720773IPR003169GYF domain
SMARTSM004442.6E-5721775IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.6E-8722772IPR003169GYF domain
SuperFamilySSF902299.89E-612061231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.58712061232IPR000571Zinc finger, CCCH-type
SMARTSM003560.001612061232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1233 aa     Download sequence    Send to blast
MENIETLLAA VAQTQGFDDD EPVVPTPPPP PPSRLVNFDS SPEIPGDLGD SQLVEAPVEV  60
SRDLLRSTAN RTPETAVPAT DRVIGADDKK KRGRPPRGQL AVKPPPQKRA KQEDEDEDVC  120
FICFDGGSLV LCDRRGCPKA YHPACIKRDE AFFKSKAKWN CGWHICSVCR KASHYVCYTC  180
TYSLCKGCTK DADYVCVRGN KGFCSTCMKT ITLMENQGPV NSDSGVQVDF DDVTSWEYLF  240
KMYWVPLKEK LSLTMSDLTK ARNPWKGVAP VVCTPQLSNV LDGKVSIPIK SSEHLEINKL  300
EEAQNKTLMS AVSRASNHIE IPNSNSGENE TIFSKDTKIL NANETSIGGN CGKDTSNPVI  360
KNEEDNLSIV KDRGEPRDGN PDNSAGFVDS VASGMEVDVD NSLMQIKSKK EEMFGDSEER  420
KPQNKSRDYA AIDVHNINLI YLRRNMMENL VEDKENFHDK VLGSIVRIRI SSDDQKPDVY  480
RLVKIVGTRK VAEPYKIGDR TANIMLEVLN LDMQEVISVD AISNQDFTKD ECRQLHQGIK  540
CGLMEQFTVD EIKKKAMALQ PVRVKYWLEA EILQLNHLQD QVSKKGRKKE LREHVRKIQL  600
LNSPEEYQRR IVQVPEIHVD PDVISPDAEL EDVKSCDNSR KDEHVMPRYL ESSQVNGKED  660
GEKIDASVSD NAEKLIDQVN VTNSTIGGRN ESNDQRSEME TSSATVSVRN FLPVNIIETE  720
KLWHHRDHNG KIQGPFSMMH LRDSSKIGLF PHNMRIWTNH EQYDSLLLTD ALSGRFHGAS  780
EWRHDRNDGD SKQKETASCN NATVLPDNNS GSVRANESPS WPQCWDLLKD DEVSNGPQNT  840
EKIPNLPNQN ETTSGGNKSL QEKENPRPLP IDLSLNDIDI DSGCVSAPVS TNFPLQNSGI  900
LELLSPKDDH KATEKPPPGL PNFPVPNAGP SWTPEVANEW CGYASTPAKP CAADAWDSDL  960
VSAPSQRPHE VTNWLAMMNE PIEFDALGEE SVSDLLAEVD AMESQGVFPS PTSAMKFAKE  1020
MLDCRDDCFS SIEEFSSTND VCKPVIASSS VIDGLDSFNN SSSVGSAVEN NNSSSVYTGG  1080
TGSDFHQETA DPGWGAVQGN INLVTVQGNV NLVLGGPSAQ GMANMGWGNP YQTAGWGNPN  1140
LNQSPVNGNL PWEGPRKYGG ERFPSPREWG GCYQGGGEPG FGRGRLPWGR PPFSGGGGGG  1200
YSRPPPKGQR ICKFYESGRC KKGAFCDYLH PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A3e-121171861581Histone-lysine N-methyltransferase NSD3
4gnd_C3e-121171861581Histone-lysine N-methyltransferase NSD3
4gne_A3e-121171861581Histone-lysine N-methyltransferase NSD3
4gnf_A3e-121171861581Histone-lysine N-methyltransferase NSD3
4gng_A3e-121171861581Histone-lysine N-methyltransferase NSD3
4gng_D3e-121171861581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104111PPQKRAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853426.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
TrEMBLA0A022Q8Z20.0A0A022Q8Z2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.13e-74DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding