PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00101.1.p
Common NameMIMGU_mgv1a026043mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 80aa    MW: 8868.27 Da    PI: 10.5451
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.1e-19858151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+i++ ++ qvtfskRr  ++KKA+E+ v C+++va i fs++g++  +s+
  Migut.L00101.1.p  8 KKIDDVTKCQVTFSKRRSSVMKKANEIAVSCGVDVAFIAFSPSGRVSKFSN 58
                      689********************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-18159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.226160IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-15222IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-22376IPR002100Transcription factor, MADS-box
PfamPF003191.0E-18956IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-152237IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-153758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MGRKIDIKKI DDVTKCQVTF SKRRSSVMKK ANEIAVSCGV DVAFIAFSPS GRVSKFSNQT  60
RIEDVIERYA NLPVESRSK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853311.12e-45PREDICTED: MADS-box transcription factor 25-like
SwissprotQ9LM462e-22AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A022Q9U64e-49A0A022Q9U6_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-20AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]