PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L00203.1.p

Common Name

LOC105966614, MIMGU_mgv1a0156852mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 150aa MW: 16136.5 Da PI: 7.7183

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00203.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.4	6e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ C+l+ ++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++++++++++ Migut.L00203.1.p 2 SCNGCRVLRKGCSDTCILRTCLqwidsADSQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVC 94 6*******************9999666889********************************************************* PP DUF260 89 qlkaelall 97 q+++e++l+ Migut.L00203.1.p 95 QTAVETVLR 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.815	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCILR TCLQWIDSAD SQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGALKPI PELLGGASGD 120 DPDEASECTD MFRLRDPSPV SQKRRLFYG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00203.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846657.1	1e-107	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	2e-73	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A022QT36	1e-106	A0A022QT36_ERYGU; Uncharacterized protein
STRING	Migut.L00203.1.p	1e-107	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-76	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Migut.L00203.1.p
Entrez Gene	105966614