PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00295.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 332aa    MW: 34246.4 Da    PI: 8.1498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00295.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-054365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  Migut.L00295.1.p 43 FVCEVCNKGFQRDQNLQLHRRGH 65
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.96E-54166No hitNo description
Gene3DG3DSA:3.30.160.606.4E-64265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.7E-54365IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.974365IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKDSTVSGDS SPAKKKRNLP GMPDPEAEVI ALSPKTLLTT NRFVCEVCNK GFQRDQNLQL  60
HRRGHNLPWK LRQRKDNFTT HRAYCDVLAE ENAKPESANA AAPNADVPSS PALAAVAPPP  120
SPPPASAAPP PPPPSPPPAS AAPPPPPSPL PPPSPPQAPP PAVLPTDVVP SSLRDNNSEE  180
TPPLTNLTAS CSSTSSTNGS SSSNVFASVF ATSSSSRNSH YQTTEFTDLF RTTTHDAAPP  240
PPPPPPSSEP IIALCLSMNH QGQYSPAMQP ALSATALLQK AAQMGPASSN ASLSLGLGLG  300
LGLGLGCDGG TGLKELRKGT PSVFGPKQHH S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00295.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A022QR471e-173A0A022QR47_ERYGU; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-38indeterminate(ID)-domain 2