PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L00297.1.p

Common Name

LOC105967836, MIMGU_mgv1a009808mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bZIP

Protein Properties

Length: 332aa MW: 35229.7 Da PI: 6.2619

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L00297.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	74.5	1.4e-23	239	301	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL++kv++L +eN++L++el++l+k ++kl se+ Migut.L00297.1.p 239 ERELKKQKRKQSNRESARRSRLRKQAECEELQRKVEALNNENRTLRDELDRLSKDCQKLASEN 301 89**********************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.5E-30	1	97	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	6.0E-19	234	298	No hit	No description
Pfam	PF00170	2.5E-21	239	301	IPR004827	Basic-leucine zipper domain
SMART	SM00338	5.6E-21	239	303	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.231	241	304	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-11	242	298	No hit	No description
CDD	cd14702	5.46E-25	244	295	No hit	No description
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MGAGEESTPT KSSKPASSAN ETPVTPSTPA YPDWSSSMQA FYGAGATPPF FASTVPSPSP 60 HPYFWGGQHP MMAPYGTPVP YPTLYPPGGI YAHPHMPMTP SAEQGTAELD GKATEGKDRA 120 SSKKPKGILV NHGGKTGDSG NAASGSGNDV GTQSAESGSE GSSDASDDND NQGFSGAKKG 180 SFDQMLADGA NAQNNFQTSV PGNPVVGMDL WNASSAGSGP MKMRQNPPGM MNDQWVPDER 240 ELKKQKRKQS NRESARRSRL RKQAECEELQ RKVEALNNEN RTLRDELDRL SKDCQKLASE 300 NNSIKDELTK LCGPEVVSKL DNGNSAPHLQ S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	261	RRSRLRK
2	255	262	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L00297.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847890.1	0.0	PREDICTED: G-box-binding factor 1-like
Swissprot	P42774	1e-100	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A022QIR1	0.0	A0A022QIR1_ERYGU; Uncharacterized protein
STRING	Migut.L00297.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	7e-82	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	Migut.L00297.1.p
Entrez Gene	105967836

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]