PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00370.1.p
Common NameMIMGU_mgv1a022685mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 204aa    MW: 22490.7 Da    PI: 9.7791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.5e-19451148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+ +vkq+G g+W++ ++  g+ R++k+c++rw +yl
  Migut.L00370.1.p  4 KGAWTKEEDDRLISYVKQHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 51
                      79******************************99************97 PP
2Myb_DNA-binding56.37.2e-1857101147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T eEd+ +++++++lG++ W++Ia++++ gRt++++k++w+++
  Migut.L00370.1.p  57 RGNFTREEDDVIINLHTLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 101
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.757151IPR017930Myb domain
SMARTSM007173.5E-14353IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-30398IPR009057Homeodomain-like
PfamPF002495.0E-17451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-24558IPR009057Homeodomain-like
CDDcd001676.56E-12651No hitNo description
PROSITE profilePS5129427.6552106IPR017930Myb domain
SMARTSM007177.3E-1656104IPR001005SANT/Myb domain
PfamPF002492.7E-1557101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2859106IPR009057Homeodomain-like
CDDcd001671.15E-1159102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
HTNKGAWTKE EDDRLISYVK QHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF  60
TREEDDVIIN LHTLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLIGRG IDPQNHKPVT  120
TKPPAAAAIN APREENPKTS FPASMQNDGV PMMAAMVGGA FRVVITGGAE ELSSSSSSSG  180
LSEEKELLLV PQINLELSIS PPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-3041067108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00370.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847904.11e-149PREDICTED: transcription repressor MYB4-like
SwissprotQ9SZP11e-79MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A022QIQ41e-147A0A022QIQ4_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-79myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]