PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00491.1.p
Common NameLOC105953438, MIMGU_mgv1a021661mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 330aa    MW: 36131.6 Da    PI: 8.3855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.4e-14248273126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ +++tG C+y d+C+FaHg
  Migut.L00491.1.p 248 WKTELCNKWQETGACPYVDNCQFAHG 273
                       8************************8 PP
2zf-CCCH29.11.7e-09286311126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykte Cr  +++G C+yG rC+F H+
  Migut.L00491.1.p 286 YKTEVCRLLLAGGSCPYGHRCHFRHS 311
                       9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-18242280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10244279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173247275IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7247274IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-11248273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-14281314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9281316IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07285313IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6286311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQKENVSYDS LITSSAAAAD KSSASAASML HFSGGNPFLS PNSPTYVNSD ASLYTSLFQN  60
HSPSENASFD GGDTDRRLHD ASRVLEYQQL YNDYTLCLAQ LCDSVEEVEA LRRENDSLRL  120
SNADLSHRVA LLFSRDRLLS GFNRLNLGST SAAAAAAPPR AAAAHIAATQ PLTVRNRADR  180
KGTERVTLPK SISVRSSGYL KMPRPISDAT ENKALLSQPA AASQRVYVPA GSKKEEPLEL  240
DVYNQGMWKT ELCNKWQETG ACPYVDNCQF AHGIKELRPV IRHPRYKTEV CRLLLAGGSC  300
PYGHRCHFRH SLTEQERLTA AAPPPPLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22248314470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832553.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like isoform X1
TrEMBLA0A022RMW80.0A0A022RMW8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-68C3H family protein