PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L00879.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 253aa    MW: 27942.6 Da    PI: 10.49
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L00879.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161561148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+ +Ed+llv++v ++G+++W+tI ++m  gR + +c+ rw ++l
  Migut.L00879.2.p 15 KGHWSCDEDKLLVELVIRHGPRNWSTIGKKMK-GRRGSSCRARWMNHL 61
                      789****************************9.*************97 PP
2Myb_DNA-binding24.37.1e-0868109245
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++++eE e+++++ k +G++ W++  + +  gRt+ q+k+ ++
  Migut.L00879.2.p  68 TPFSEEEKERILQLYKDHGSK-WSSFVEFFR-GRTDCQLKNLYH 109
                       68*******************.*********.****99999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6051065IPR017930Myb domain
SuperFamilySSF466894.67E-2613108IPR009057Homeodomain-like
SMARTSM007172.8E-131463IPR001005SANT/Myb domain
PfamPF002496.3E-151561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221668IPR009057Homeodomain-like
CDDcd001671.60E-121861No hitNo description
PROSITE profilePS512948.47366116IPR017930Myb domain
SMARTSM007170.02466114IPR001005SANT/Myb domain
PfamPF002498.9E-667109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-1569111IPR009057Homeodomain-like
CDDcd001672.28E-469111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEAFLSLKRK PESRKGHWSC DEDKLLVELV IRHGPRNWST IGKKMKGRRG SSCRARWMNH  60
LNPQVVKTPF SEEEKERILQ LYKDHGSKWS SFVEFFRGRT DCQLKNLYHS LAATRKKAKE  120
PQIPYWAAPP NMGGSMDFSG GSGGLTNVSQ FADVAWWGNK TDLPLFNGGA GGSSSIYAGG  180
STLFGAHRPN PGGFYPFENT NIGNGYYANL GKNNGDPMMS RARSAAPQAK EGGAKNEKLS  240
IHRLFGGRKI SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-25111106153MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-25111106153MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L00879.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828884.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A022QCR71e-170A0A022QCR7_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-31myb domain protein 69