PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L01462.1.p

Common Name

MIMGU_mgv1a019162mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

YABBY

Protein Properties

Length: 214aa MW: 23705.7 Da PI: 5.0729

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L01462.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	182.2	2.8e-56	9	180	3	166
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 v+ eqvCyvqC+fC+t+l+vsvP +sl +vvtvrCGhCts+lsvn+ ka +l + ++ +++l + + e +ee + + ++ + ++ Migut.L01462.1.p 9 VDIGQEQVCYVQCGFCSTVLLVSVPCSSLTMVVTVRCGHCTSILSVNMVKACfvplHLFTPINNQQQELMVQPKWEVCSEEVAANDKKLAANN 101 556689***************************************9998766665555555444444444334444444444444444444 PP YABBY 92 astsvssekl...senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 ++t +s + ++++++++ ++ + +PPek+qr+Psayn fikeei+r+k + P+++h++af aaaknWah P+ Migut.L01462.1.p 102 NNTCSPSLCFssdEDDDEDSINHINGvIHKPPEKKQRAPSAYNHFIKEEIKRLKIEYPNMTHKQAFGAAAKNWAHCPQS 180 444444444443233444456666665679*********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.3E-55	13	179	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	125	180	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.3E-5	131	180	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSSELDNSVD IGQEQVCYVQ CGFCSTVLLV SVPCSSLTMV VTVRCGHCTS ILSVNMVKAC 60 FVPLHLFTPI NNQQQELMVQ PKWEVCSEEV AANDKKLAAN NNNTCSPSLC FSSDEDDDED 120 SINHINGVIH KPPEKKQRAP SAYNHFIKEE IKRLKIEYPN MTHKQAFGAA AKNWAHCPQS 180 VNKGGEVLHS CNERDNDKMA INYSDDVDNE VIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L01462.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848044.1	1e-156	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	1e-54	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A022QKJ1	1e-155	A0A022QKJ1_ERYGU; Uncharacterized protein
STRING	Migut.L01462.1.p	1e-158	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	Migut.L01462.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]