PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L01670.1.p

Common Name

LOC105956674, MIMGU_mgv1a017223mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 9408.21 Da PI: 10.7312

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L01670.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	136.4	6.5e-43	23	88	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 vea+GlnPGlivllvvgglll fl+gny+lyvyaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe Migut.L01670.1.p 23 GVEAQGLNPGLIVLLVVGGLLLSFLIGNYVLYVYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 88 58***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	7.8E-40	25	88	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MADAGFDRVP PSFDRVKNAA GGGVEAQGLN PGLIVLLVVG GLLLSFLIGN YVLYVYAQKT 60 LPPKKKKPIS KKKMKKERLK QGVSAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L01670.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836001.1	6e-56	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q42337	3e-16	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A022REV5	1e-54	A0A022REV5_ERYGU; Uncharacterized protein
STRING	Migut.L01670.1.p	2e-55	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49

Link Out ? help Back to Top
Phytozome	Migut.L01670.1.p
Entrez Gene	105956674