PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.L01755.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 1011aa    MW: 110164 Da    PI: 7
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.L01755.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031849871123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg +F+ ++ L rH+  H
  Migut.L01755.1.p 849 HECTICGLRFKLQERLGRHMEWH 871
                       78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5139137.70977205IPR006569CID domain
Gene3DG3DSA:1.25.40.901.1E-4278202IPR008942ENTH/VHS
SuperFamilySSF484643.6E-3879201IPR008942ENTH/VHS
SMARTSM005821.3E-4180202IPR006569CID domain
CDDcd035623.92E-3882192No hitNo description
PfamPF048187.0E-9133186IPR006903RNA polymerase II-binding domain
PROSITE profilePS501579.452849876IPR007087Zinc finger, C2H2
PROSITE patternPS000280851871IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
MEMESTRRAF DRSMSKEPGL KKPRLIEDPT AQDRISNGRG GLVQRPTVSN SGIGAGSRVQ  60
SGDSMRGPYQ HQVAPQLHQE LVTQYKTALA ELTFNSKPII TNLTIIAGES SHAAKAIAAT  120
ICTNIIEVPS EQKLPSLYLL DSIVKNIGKD YIRYFASRLP EVFCKAYRQV EPAIHQGMRH  180
LFGTWKGVFP PQTLQMIENE LGFTTAANGS PSRTTSRQDS QAQRPAHSIH VNPKYLEARR  240
LQTTRARDSV SDSGEALLTS HEDVEELERA ASISSGRSWA DPYAKPIQHH HRDQVNGPVR  300
GKSSSVPYSD SEYGSSVLGR PGLETGRVVE NLKERGYDRS WYESGSNVTG MSHQKNGFGL  360
KRGFEGYAGH ESANSNSDLQ LNQKIVGRNT VEMSENWKNS EEEEYMWDEM NSRSTVRDAE  420
DASKDHWGPD NHVQLDFQSH LRRPQNVHDI GSRDDDEASA DSISMDLGQL ASGTQMPLWS  480
RKLHPTESMM LSEGGKSVSG YSEAYPTVLK NSQTAVGRAH SQSHLSPSHI GGSSFKLSTN  540
PVPVPKVAIT QQGKLPGAAP SLKRSVIPQR PPSPSFPNQL LNNFAERNQT SVGPPTDPRR  600
PLGQTSRQKL QPQSLRSSST LIPSVQQRKN IPSAQKRNLE VSELDMPSQV SGSESRSTRG  660
NSSSDQSNPL TVHSPSKSIS SISLDAVVKS GIQGIGSKLL PTGSKKKVEH PSLPTGLPPL  720
SLAGIGSEQT PSAVSSSSNP FSSLLSSLVA KGLISSSKSD SLMVPVDKVP AVATSSSSPV  780
SSVPFTIPKP LVSITDIPSS SLEPAVKASN DLLQSTEKIK QLIGFEFKPD VVRNSHPDVI  840
SDLVSDLPHE CTICGLRFKL QERLGRHMEW HASKFSDYNP NSNMSRKWYA SVVDWVAGIG  900
LLHLQGSPSD MLEASGEMLE TCEQMVPADE SQCACILCGE LFEDFYSQER DEWMYKAAVY  960
LTIPSSESVE RIATSNDSAI LGPIVHANCV SKDSIHDLGL VSDVKLENDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A2e-13812078141PCF11 protein
1sz9_B2e-13812078141PCF11 protein
1sz9_C2e-13812078141PCF11 protein
1sza_A2e-13812078141PCF11 protein
1sza_B2e-13812078141PCF11 protein
1sza_C2e-13812078141PCF11 protein
2bf0_X2e-138118513117PCF11
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.L01755.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836098.10.0PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
TrEMBLA0A022RFR70.0A0A022RFR7_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA494455