PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.L01765.2.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRF

Protein Properties

Length: 305aa MW: 33333.4 Da PI: 9.5445

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.L01765.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.8	3e-26	74	117	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Migut.L01765.2.p 74 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 117 79***************************************987 PP
2	QLQ	44.9	3.4e-16	4	39	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ +Q+q+L+ Q+l++++++a++ vPpeLl ++ Migut.L01765.2.p 4 SHFSLTQWQELELQALIFRHMIAGATVPPELLHLVK 39 79*****************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.0E-9	4	40	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-11	5	38	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.247	5	40	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	74	118	IPR014977	WRC domain
Pfam	PF08879	3.5E-22	75	117	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGSSHFSLTQ WQELELQALI FRHMIAGATV PPELLHLVKK SIIVNYPPSS YHHYYPHYQP 60 ALLQSGYWGK SAMDPEPGRC RRTDGKKWRC SRDVVAGHKY CERHMHRGRN RSRKPVEIPT 120 PKSNQGAVSA TSTGTGGGFP RFTLSAPSDL LHLNQSDICR PTNSIIETKV HLQQSQTNNK 180 TLRHFFDDWP PKPLGHEDDN SMMTSSSSTK LSISMPENPS SDFSLKLGTG GDGGEAAGGN 240 RVIVDENSSS SSRLNWGMMT WQNNPAAPMG GPLAEALRSS VSNSSPTSVL HRLPPGGASQ 300 SSYV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.L01765.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836103.1	0.0	PREDICTED: growth-regulating factor 3 isoform X1
Swissprot	Q8L8A7	1e-65	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A022RI87	1e-174	A0A022RI87_ERYGU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	6e-51	growth-regulating factor 4

Link Out ? help Back to Top
Phytozome	Migut.L01765.2.p

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]