PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00153.1.p
Common NameLOC105952622, MIMGU_mgv1a006193mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 454aa    MW: 49886.8 Da    PI: 8.4974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-055676323
                      ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                      C++Cgk F r  nL+ H r H
  Migut.M00153.1.p 56 CEICGKGFQRDQNLQLHRRGH 76
                      *******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-65376No hitNo description
SMARTSM003550.0765476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035525095125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-6125150No hitNo description
SMARTSM00355150130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTSEAISIGS TTQNPSSDGS NPPPKKKRNL PGTPDPEAEV IALSPKTLMA TNRFLCEICG  60
KGFQRDQNLQ LHRRGHNLPW KLKQRSTKEV RKRVYVCPEK TCVHNHPSRA LGDLTGIKKH  120
FCRKHGEKKW KCDKCSKRYA VHSDWKAHSK TCGTREYKCD CGTIFSRRDS FITHRAFCDA  180
LAEETARFTA ASQNITNHIA PNNNINYHFI GSSPLGHHYP STGPLFPTGR GSLPLWMAQC  240
PPRVEDSTPK NHQEMHHHPM GVPFTFGALD NNFSNFDPLV NNNPSSSNYH LNWDLANNPI  300
PLSNAREVSA PSLFSTQNHH QPSNATISAT ALLQKAAQIG ATTTTTHEHP SLILGSFGGE  360
NSNNMGVQED HGNKFCGLYG TSSAATSGGG LGNSDVESSV VNDFSPLNQM EINYLSKRRR  420
LLSSDEGETR DFLGVGVQSI CHPSSMNIMD GCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35126194371Zinc finger protein JACKDAW
5b3h_F3e-35126194371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416420KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00153.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831644.10.0PREDICTED: zinc finger protein NUTCRACKER isoform X2
SwissprotQ9FFH31e-138IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A022RT890.0A0A022RT89_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-138C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]