PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00160.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 400aa    MW: 44342.4 Da    PI: 7.86
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06132152526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+ f++ G+C  Gd+C F+Hg
  Migut.M00160.1.p 132 VCSEFRK-GHCGKGDNCEFSHG 152
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-4127154IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-6127153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313127154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.73E-5129152IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4132152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4159191IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.165162186IPR000571Zinc finger, CCCH-type
SMARTSM003562.7162185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMGSVCAEQQ QHKFHHSHQL FNNLTKKSLR DIDIPPRKLL GRRSAAAAAA GDVYSDSPRA  60
EDAVFSKFLP YNNADADEDD DPYSSDQFRI YEFKVRKCNR SRSHDWTDCP FAHPGEKARR  120
RDPRRYRYSG TVCSEFRKGH CGKGDNCEFS HGVFECWLHP SRYRTEACKD GKNCKRKVCF  180
FAHSTRQLRI VPDTSSPSSP PSAAAAMDHS PAAMAAEKNM YRNQNCCVFC HSVTTTASPT  240
STLMMGMSHH LSPPASPPIS PAYSPEFSPY GFPPEFGGGG GGLSYKDAIL NELMASVEAM  300
NMNEAAQAAA KRNLPWLDVN FSAEEHQPQF VLSPSTPTTL GGRGHSKFMS GDSKFVSGDS  360
KFYRGDFSGR NLMEDNRYNN NNEGNMVGPD LGWVNDLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831641.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
TrEMBLA0A022RNS50.0A0A022RNS5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-54C3H family protein