PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M00164.1.p

Common Name

MIMGU_mgv11b024198mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HB-other

Protein Properties

Length: 170aa MW: 19812.2 Da PI: 6.5125

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M00164.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	35	90	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ ++++++q++++eelF ++++++++r+eL+++lg++e q+k+WFqN+R+++k Migut.M00164.1.p 35 RKRHHRHSAHQIQRMEELFTDSPHLDKKQRRELSEELGMEELQIKFWFQNKRTQMK 90 6788899**********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.17E-17	22	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-18	26	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.05	32	92	IPR001356	Homeobox domain
SMART	SM00389	3.4E-14	34	96	IPR001356	Homeobox domain
CDD	cd00086	9.12E-14	35	90	No hit	No description
Pfam	PF00046	1.2E-16	35	90	IPR001356	Homeobox domain
PRINTS	PR00031	4.8E-5	63	72	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	67	90	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.8E-5	72	88	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MNSNVSEGDD ASSFVNDEND NISICENSET QPQNRKRHHR HSAHQIQRME ELFTDSPHLD 60 KKQRRELSEE LGMEELQIKF WFQNKRTQMK GKYEHKQNTY LRAENEKLRE ENLKLGESLS 120 NACCLACGKM IDLGDLCQGE RRLRMENARL IEEIDRITTL AAKYIGRSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M00164.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022140691.1	2e-53	homeobox-leucine zipper protein HDG2-like isoform X1
Swissprot	Q0J9X2	2e-53	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A022RQT8	1e-122	A0A022RQT8_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	2e-42	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Migut.M00164.1.p

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]