PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00166.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 206aa    MW: 22352.5 Da    PI: 10.3361
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.8e-4180155277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cq+e+C+adls+ak+yhrrhkvCe+h+ka+vv+v+g++qrfCqqCsrfh++ efDe+krsCrrrLa+hnerrrk+ 
  Migut.M00166.1.p  80 CQAEKCSADLSDAKTYHRRHKVCEHHAKAQVVVVAGIRQRFCQQCSRFHDILEFDESKRSCRRRLAGHNERRRKNP 155
                       **************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3372141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.64177154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.45E-3879159IPR004333Transcription factor, SBP-box
PfamPF031102.8E-3180153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEISINRANN QLKIQQNPII NNENMKKTAA DHQSQDHDLF GGGGAPDQED KRKRAASGGG  60
ATNTKKSSGG GGASSTMKSC QAEKCSADLS DAKTYHRRHK VCEHHAKAQV VVVAGIRQRF  120
CQQCSRFHDI LEFDESKRSC RRRLAGHNER RRKNPADSYS QGAAEGGGSS SSTTTTSRIK  180
GGSSNTSSGH VQENANNYNK HFHIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-3870153184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00166.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831705.11e-131PREDICTED: squamosa promoter-binding protein 1-like
TrEMBLA0A022RQ551e-129A0A022RQ55_ERYGU; Uncharacterized protein
STRINGMigut.M00166.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.25e-38squamosa promoter binding protein-like 4