PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00219.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 123aa    MW: 14096 Da    PI: 4.5091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00219.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.8e-2016106199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv    +   s r+++p +f+e++g k  ++  +tl+++sg s++  +  +k  +  +l+kGW eFvk+n ++egDf++F++ g+s f  +
  Migut.M00219.1.p  16 FFKVH--VSEIYSERMRIPPDFIEKFGRK--KPAIVTLKTTSGISFRADM--KKINECWFLEKGWPEFVKENSVEEGDFLTFSYAGKSVF--N 100
                       66666..66677789***********988..5669***************..66666678*************************99999..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       vkvf k
  Migut.M00219.1.p 101 VKVFAK 106
                       999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-2410109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-2310109IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-1614104No hitNo description
PROSITE profilePS5086313.0714107IPR003340B3 DNA binding domain
SMARTSM010194.2E-1816107IPR003340B3 DNA binding domain
PfamPF023628.3E-1816106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEDQITVNDD DDLPEFFKVH VSEIYSERMR IPPDFIEKFG RKKPAIVTLK TTSGISFRAD  60
MKKINECWFL EKGWPEFVKE NSVEEGDFLT FSYAGKSVFN VKVFAKNGCI KSVDNLEEDE  120
PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00219.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844349.11e-83PREDICTED: B3 domain-containing protein At1g16640-like
TrEMBLA0A022QSB24e-75A0A022QSB2_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-17B3 family protein