PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M00283.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HB-other

Protein Properties

Length: 236aa MW: 26857.2 Da PI: 10.7095

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M00283.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.7e-18	71	126	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t +q+++Lee+F n++p++++r eL ++lg++ q+k+WFqN+R ++k Migut.M00283.1.p 71 RKRHQRHTLHQIQRLEEYFWGNPHPTKKQRNELGEELGMEPLQIKFWFQNKRFQMK 126 6788899*********************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.77E-18	56	126	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-17	62	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	68	128	IPR001356	Homeobox domain
SMART	SM00389	6.6E-14	70	132	IPR001356	Homeobox domain
CDD	cd00086	2.67E-13	71	129	No hit	No description
Pfam	PF00046	2.2E-15	71	126	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MENQFGPGWT RSEPGPTSPR VGFGSPKSRT QTTTRPVAVS MKNSGMSSDG TQNEENVSSI 60 CENSETRRQN RKRHQRHTLH QIQRLEEYFW GNPHPTKKQR NELGEELGME PLQIKFWFQN 120 KRFQMKVKHE HRENTFLRVE NEKLQEENSR LRESLINACS IGCGRMFAPR DMSSNERQLR 180 MENERLTEQF CRVAAVAANC IGKKYSSSSP SSSGAAATFR GTKGKGKGKG KKVMF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M00283.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234199.1	4e-45	homeobox-leucine zipper protein HDG2 isoform X1
Refseq	XP_029130378.1	4e-45	homeobox-leucine zipper protein HDG2 isoform X1
Swissprot	A2YR02	2e-42	ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
Swissprot	A3BPF2	2e-42	ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBL	A0A022RQT8	3e-59	A0A022RQT8_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	3e-41	homeodomain GLABROUS 2

Link Out ? help Back to Top
Phytozome	Migut.M00283.1.p