PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00366.1.p
Common NameMIMGU_mgv1a025340mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 247aa    MW: 28438.8 Da    PI: 5.2356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00366.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l  ++ ++G ++W++ +   g+ R++k+c++rw +yl
  Migut.M00366.1.p 14 KGAWSEEEDNKLRAYICRYGHPNWRLLPVFAGLARCGKSCRLRWVNYL 61
                      79********************************************97 PP
2Myb_DNA-binding49.59.9e-1667110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+ E +l+++++ qlG++ W++Ia++++ gRt++++k++w+ 
  Migut.M00366.1.p  67 RGKFTEYEKDLIIKLHDQLGTK-WSAIAAKLP-GRTDNEVKNYWHA 110
                       89********************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.176961IPR017930Myb domain
SuperFamilySSF466893.15E-2811108IPR009057Homeodomain-like
SMARTSM007177.4E-101363IPR001005SANT/Myb domain
PfamPF002492.3E-121461IPR001005SANT/Myb domain
CDDcd001677.56E-81661No hitNo description
PROSITE profilePS5129422.83662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2365115IPR009057Homeodomain-like
SMARTSM007179.5E-1366114IPR001005SANT/Myb domain
PfamPF002494.3E-1467110IPR001005SANT/Myb domain
CDDcd001671.88E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVRPPCFDKN GMKKGAWSEE EDNKLRAYIC RYGHPNWRLL PVFAGLARCG KSCRLRWVNY  60
LKPGLKRGKF TEYEKDLIIK LHDQLGTKWS AIAAKLPGRT DNEVKNYWHA HINKRTKRND  120
TITKEQSVSG LEEHVSEDVF GKDLSVENPK NLDDLDTFVD SFLADKVSGD FWTDIYYRTC  180
FGQSFGEEET RDFGLVHQEM QNVNKPTCSD SSDSGITTSW GSTEESQENF WSEPLLEDDT  240
FDMVLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00366.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852362.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LNC91e-52MYB13_ARATH; Transcription factor MYB13
TrEMBLA0A022QC530.0A0A022QC53_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.14e-55myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]