PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00396.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 400aa    MW: 45433.6 Da    PI: 8.7251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00396.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07730126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC+ + r G C++   C+FaHg
  Migut.M00396.1.p  7 YKTKLCMLYER-GRCPR-QFCNFAHG 30
                      9******9999.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.8E-5335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-10535IPR000571Zinc finger, CCCH-type
SMARTSM003560.0066631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.681632IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVERELYKTK LCMLYERGRC PRQFCNFAHG TAELRRSFNG REEYREGRDL RERLDRMRSP  60
LDNSPGRGDA KARHSSRGDS PRSVGKRIER NHRKRRQLDG HNNDYSGRMS DGTEDKIKDR  120
RHISSDTKVR ADEQLRELHS EIKMLESDRR RMEMYLEDKV KQADNFTMKI HELEMQLSKE  180
KEEGKRLTTK IKKFVKAHSR HLRLQDELKR SHAHFQKLGE QLASDAVGPG NEEINTMSDD  240
VAGGYASPLN EGQLNAAPPK KRSRVFMGAH DSSNQVGRSR VDKLSRHSGN HDKFSNSKKP  300
EADGDAATAT ADKYKVSEAG LPKPPTGIAA NAIDEDVEVV ETDNNKFQVV GAETEVALRT  360
TPRLPFPPPP PPPIPHNVYS QYKGDDDDEN EETVEVDIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00396.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852466.10.0PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLA0A022QA271e-173A0A022QA27_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-33C3H family protein