PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00766.1.p
Common NameLOC105967891, MIMGU_mgv1a008664mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HB-other
Protein Properties Length: 367aa    MW: 40480.6 Da    PI: 7.5615
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00766.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.3e-0734742555
                      --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
          Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                      p +e  e LA++           +++ +qV +WFqNrR+  
  Migut.M00766.1.p 34 PVREILEALAQRFsaaadragkvEVSSKQVWNWFQNRRYAL 74
                      66777777777777777777777***************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0093781IPR001356Homeobox domain
SuperFamilySSF466898.98E-91279IPR009057Homeodomain-like
PROSITE profilePS500718.8921377IPR001356Homeobox domain
CDDcd000861.80E-41375No hitNo description
Gene3DG3DSA:1.10.10.607.9E-71377IPR009057Homeodomain-like
PfamPF000461.7E-42074IPR001356Homeobox domain
PfamPF167192.1E-41151278IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFNAVEVG EMEAILQAHN YAVPVREILE ALAQRFSAAA DRAGKVEVSS  60
KQVWNWFQNR RYALRARGTR TPVPGEMNVI PTLPREDQPT AVRNVPQPPP PQLAPSTYSH  120
PAAVKSVAQV PHPLPVPSVQ SAVRNASDSS QMEFEAKSAR DGAWYDVTSF LSHRSLDTGD  180
PEALVRFAGF GPEEDEWVNI RKHVRQRSLP CESSECVAVL PTDLILCFQE GKEQALYFDA  240
HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKICRR PETDYRLQQL HAGSTNAIPQ  300
KIGVESQGGN TLKVNSTAGD SSPLVKQQQI KPEEAMTNNA AAPANIPNSG ESKLIPSIIN  360
SEMLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-471492821134SHH1 SAWADEE
4iur_B3e-471492821134SHH1 SAWADEE
4iut_A3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-471492821134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00766.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847944.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-140SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A022S1860.0A0A022S186_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-128sequence-specific DNA binding transcription factors;sequence-specific DNA binding