PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00776.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 193aa    MW: 21040.6 Da    PI: 9.0525
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00776.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-171670357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      ++ ++++eq++ Le+ F   +++  e++ +LA++lg++ rq+ +W+qN+Ra++k+
  Migut.M00776.1.p 16 QKKRLSQEQVRLLEASFDAAKKLEPEHKFQLARQLGVPPRQIAIWYQNKRARWKN 70
                      56789************************************************95 PP
2HD-ZIP_I/II108.35.5e-3516107293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +k+rls+eqv+lLE sF++ +kLepe+K +lar+Lg+ prq+a+W+qn+RAR+k++ lE d+ +L+ +++a ++e+erLe++v++Lr elk+
  Migut.M00776.1.p  16 QKKRLSQEQVRLLEASFDAAKKLEPEHKFQLARQLGVPPRQIAIWYQNKRARWKNQSLELDCGSLQVRLEAAEAEKERLERQVASLRGELKR 107
                       79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8071171IPR001356Homeobox domain
SuperFamilySSF466892.0E-161378IPR009057Homeodomain-like
SMARTSM003891.3E-121375IPR001356Homeobox domain
PfamPF000461.4E-141670IPR001356Homeobox domain
CDDcd000866.36E-121772No hitNo description
Gene3DG3DSA:1.10.10.604.9E-181874IPR009057Homeodomain-like
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNNLPQNPKN HSHRAQKKRL SQEQVRLLEA SFDAAKKLEP EHKFQLARQL GVPPRQIAIW  60
YQNKRARWKN QSLELDCGSL QVRLEAAEAE KERLERQVAS LRGELKRAQD SLSGFRQLAA  120
AQAPPVSSLS STCCDEGGGS SSLNDDVGCS ANWANGGGGG GAGDALQFEE LYACLMLARS  180
GAKRLINENG QR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00776.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848848.11e-126PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBLA0A022RY581e-125A0A022RY58_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-29homeobox protein 52