PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.M00787.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

SBP

Protein Properties

Length: 185aa MW: 20783.7 Da PI: 10.1787

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.M00787.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.5	2.6e-40	99	175	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C ve+C+++ls +k+y++rhkvCevh+kapvv+v+gl qrfCqqCsrfhe++efDe+krsCrrrLa+hnerrrk++ Migut.M00787.1.p 99 CCLVESCRKNLSGCKNYYQRHKVCEVHAKAPVVFVDGLGQRFCQQCSRFHEVTEFDETKRSCRRRLAGHNERRRKSS 175 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.7E-32	92	161	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.889	97	174	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.06E-37	97	177	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.2E-31	100	173	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MPSIFHLLLF RTLISSFLNL NSSTTTVFRK KKEKKKNPNN PKMTSSYLKI TEGDDEEDEG 60 ESDVELEFVG SPLKRKKMNL GQGSSGRRSG GGGAAAPPCC LVESCRKNLS GCKNYYQRHK 120 VCEVHAKAPV VFVDGLGQRF CQQCSRFHEV TEFDETKRSC RRRLAGHNER RRKSSLEPNT 180 RAKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-33	90	173	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	RKKKEK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.M00787.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT717965	0.0	KT717965.1 Erythranthe guttata squamosa promoter-binding protein 1 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847855.1	1e-134	PREDICTED: squamosa promoter-binding protein 2-like
Swissprot	Q38740	6e-51	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A022RZ65	1e-100	A0A022RZ65_ERYGU; Squamosa promoter-binding-like protein
STRING	Migut.M00787.1.p	1e-134	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	7e-36	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Migut.M00787.1.p

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]