PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.M00986.1.p
Common NameLOC105968593, MIMGU_mgv1a012605mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28292.8 Da    PI: 9.9861
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.M00986.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.91e-312575151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Migut.M00986.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 75
                      79***********************************************95 PP
2K-box106.14.1e-35951906100
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkk 97 
                       + s +ea+++ +qqe++kL+++i+nLq+++R++lGe+L+ L+l++L++Le+++e+++++iRskKnell+++ie++qk+ e el+++n++Lr+k
  Migut.M00986.1.p  95 NGSISEANTQFYQQEASKLRAQINNLQNQNRNMLGESLGGLNLRDLKNLESKVERGISRIRSKKNELLFAEIEYMQKRqEIELHHNNQYLRAK 187
                       34489**********************************************************************9974679*********** PP

             K-box  98 lee 100
                       ++e
  Migut.M00986.1.p 188 IAE 190
                       986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-391776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.521777IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-331892IPR002100Transcription factor, MADS-box
CDDcd002651.64E-451892No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-321939IPR002100Transcription factor, MADS-box
PfamPF003199.1E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-325475IPR002100Transcription factor, MADS-box
PfamPF014862.6E-25101188IPR002487Transcription factor, K-box
PROSITE profilePS5129715.235103194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEFQSDQSRE MSPQRKNGRG KIAIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYSNNSVKA TIERYKKASS DSPNNGSISE ANTQFYQQEA SKLRAQINNL  120
QNQNRNMLGE SLGGLNLRDL KNLESKVERG ISRIRSKKNE LLFAEIEYMQ KRQEIELHHN  180
NQYLRAKIAE TERAHQQNMN LMPGSSSFNL VQPQPFDARN YLQINGLQSN DHDYTVQDHP  240
PLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-2018101186Myocyte-specific enhancer factor 2A
3kov_B3e-2018101186Myocyte-specific enhancer factor 2A
3kov_I3e-2018101186Myocyte-specific enhancer factor 2A
3kov_J3e-2018101186Myocyte-specific enhancer factor 2A
3p57_A3e-2018101186Myocyte-specific enhancer factor 2A
3p57_B3e-2018101186Myocyte-specific enhancer factor 2A
3p57_C3e-2018101186Myocyte-specific enhancer factor 2A
3p57_D3e-2018101186Myocyte-specific enhancer factor 2A
3p57_I3e-2018101186Myocyte-specific enhancer factor 2A
3p57_J3e-2018101186Myocyte-specific enhancer factor 2A
5f28_A4e-2018101287MEF2C
5f28_B4e-2018101287MEF2C
5f28_C4e-2018101287MEF2C
5f28_D4e-2018101287MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.M00986.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848677.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408851e-144AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A022QHG11e-180A0A022QHG1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]